HL_9F1D_118
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- AUUGCAAUUAU(PSU)
- Length
- 12 nucleotides
- Bulged bases
- 9F1D|1|A2|U|1622, 9F1D|1|A2|U|1623, 9F1D|1|A2|A|1624
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F1D_118 not in the Motif Atlas
- Homologous match to HL_8C3A_224
- Geometric discrepancy: 0.1869
- The information below is about HL_8C3A_224
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.2
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9F1D|1|A2|A|1615
9F1D|1|A2|U|1616
9F1D|1|A2|U|1617
9F1D|1|A2|G|1618
9F1D|1|A2|C|1619
9F1D|1|A2|A|1620
9F1D|1|A2|A|1621
9F1D|1|A2|U|1622
9F1D|1|A2|U|1623
9F1D|1|A2|A|1624
9F1D|1|A2|U|1625
9F1D|1|A2|PSU|1626
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AG
- 40S ribosomal protein S29
- Chain Ao
- 40S ribosomal protein uS19
- Chain Ar
- 40S ribosomal protein S18
- Chain As
- 40S ribosomal protein S19
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