HL_9F1D_120

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

9F1D|1|B5|C|1269

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_120 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.089

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9F1D|1|B5|U|1261
9F1D|1|B5|C|1262
9F1D|1|B5|U|1263
9F1D|1|B5|U|1264
9F1D|1|B5|G|1265
9F1D|1|B5|1MA|1266
9F1D|1|B5|A|1267
9F1D|1|B5|A|1268
9F1D|1|B5|C|1269
9F1D|1|B5|A2M|1270

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain Ba

60S ribosomal protein L27a

Chain Be

Ribosomal protein L32