HL_9F58_002
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 9F58|1|4|C|84, 9F58|1|4|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F58_002 not in the Motif Atlas
- Homologous match to HL_8P9A_187
- Geometric discrepancy: 0.1787
- The information below is about HL_8P9A_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68571.1
- Basepair signature
- cWW-tSH-tHS-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9F58|1|4|U|69
9F58|1|4|G|70
9F58|1|4|A|71
9F58|1|4|A|72
9F58|1|4|U|73
9F58|1|4|U|74
9F58|1|4|G|75
9F58|1|4|C|76
9F58|1|4|A|77
9F58|1|4|G|78
9F58|1|4|A|79
9F58|1|4|A|80
9F58|1|4|U|81
9F58|1|4|U|82
9F58|1|4|C|83
9F58|1|4|C|84
9F58|1|4|G|85
9F58|1|4|U|86
9F58|1|4|G|87
9F58|1|4|A|88
9F58|1|4|A|89
Current chains
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain J
- 60S ribosomal protein L26-A
- Chain T
- 60S ribosomal protein L35-A
- Chain V
- 60S ribosomal protein L37-A
- Chain X
- 60S ribosomal protein L39
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: