HL_9F58_018
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 9F58|1|a|C|648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F58_018 not in the Motif Atlas
- Homologous match to HL_8P9A_126
- Geometric discrepancy: 0.0681
- The information below is about HL_8P9A_126
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
9F58|1|a|U|640
9F58|1|a|C|641
9F58|1|a|U|642
9F58|1|a|U|643
9F58|1|a|G|644
9F58|1|a|A|645
9F58|1|a|A|646
9F58|1|a|A|647
9F58|1|a|C|648
9F58|1|a|A|649
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L28
- Chain Q
- 60S ribosomal protein L32
- Chain d
- 60S ribosomal protein L3
Coloring options: