HL_9F58_027

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

9F58|1|a|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F58_027 not in the Motif Atlas

Homologous match to HL_8P9A_136

Geometric discrepancy: 0.1638

The information below is about HL_8P9A_136

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

9F58|1|a|C|1076
9F58|1|a|U|1077
9F58|1|a|U|1078
9F58|1|a|A|1079
9F58|1|a|A|1080
9F58|1|a|U|1081
9F58|1|a|U|1082
9F58|1|a|G|1083

Current chains

Chain a

25S rRNA

Nearby chains

Chain M

60S ribosomal protein L29

Chain e

60S ribosomal protein L5

Chain u

60S ribosomal protein L21-A