HL_9F58_034

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F58_034 not in the Motif Atlas

Homologous match to HL_8CRE_030

Geometric discrepancy: 0.0746

The information below is about HL_8CRE_030

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9F58|1|a|A|1462
9F58|1|a|U|1463
9F58|1|a|G|1464
9F58|1|a|A|1465
9F58|1|a|G|1466
9F58|1|a|A|1467
9F58|1|a|A|1468
9F58|1|a|C|1469
9F58|1|a|U|1470

Current chains

Chain a

25S rRNA

Nearby chains

Chain O

60S ribosomal protein L31-A

Chain q

60S ribosomal protein L17-A

Chain s

60S ribosomal protein L19-A