HL_9F58_049

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F58_049 not in the Motif Atlas

Homologous match to HL_8P9A_159

Geometric discrepancy: 0.0807

The information below is about HL_8P9A_159

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9F58|1|a|A|2220
9F58|1|a|G|2221
9F58|1|a|A|2222
9F58|1|a|A|2223
9F58|1|a|A|2224
9F58|1|a|U|2225

Current chains

Chain a

25S rRNA

Nearby chains

Chain U

60S ribosomal protein L36-A

Chain Z

60S ribosomal protein L42-A