HL_9F58_052

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9F58|1|a|A|2372, 9F58|1|a|A|2373, 9F58|1|a|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F58_052 not in the Motif Atlas

Homologous match to HL_8P9A_162

Geometric discrepancy: 0.0644

The information below is about HL_8P9A_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

9F58|1|a|G|2369
9F58|1|a|G|2370
9F58|1|a|G|2371
9F58|1|a|A|2372
9F58|1|a|A|2373
9F58|1|a|C|2374
9F58|1|a|G|2375
9F58|1|a|G|2376
9F58|1|a|G|2377
9F58|1|a|C|2378

Current chains

Chain a

25S rRNA

Nearby chains

Chain Q

60S ribosomal protein L32

Chain d

60S ribosomal protein L3