HL_9F58_064

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F58_064 not in the Motif Atlas

Homologous match to HL_8CRE_062

Geometric discrepancy: 0.0946

The information below is about HL_8CRE_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9F58|1|a|U|2920
9F58|1|a|U|2921
9F58|1|a|G|2922
9F58|1|a|U|2923
9F58|1|a|U|2924
9F58|1|a|C|2925
9F58|1|a|A|2926

Current chains

Chain a

25S rRNA

Nearby chains

Chain d

60S ribosomal protein L3