HL_9F58_066

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F58_066 not in the Motif Atlas

Homologous match to HL_8P9A_176

Geometric discrepancy: 0.0864

The information below is about HL_8P9A_176

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9F58|1|a|C|3025
9F58|1|a|G|3026
9F58|1|a|A|3027
9F58|1|a|G|3028
9F58|1|a|A|3029
9F58|1|a|G|3030

Current chains

Chain a

25S rRNA

Nearby chains

Chain E

eIF-2-alpha kinase GCN2

Chain Y

Ubiquitin-60S ribosomal protein L40

Chain i

60S ribosomal protein L9-A