HL_9F58_068

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9F58|1|a|G|3116, 9F58|1|a|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F58_068 not in the Motif Atlas

Homologous match to HL_8CRE_066

Geometric discrepancy: 0.0891

The information below is about HL_8CRE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9F58|1|a|C|3110
9F58|1|a|U|3111
9F58|1|a|G|3112
9F58|1|a|A|3113
9F58|1|a|A|3114
9F58|1|a|C|3115
9F58|1|a|G|3116
9F58|1|a|C|3117
9F58|1|a|C|3118
9F58|1|a|U|3119
9F58|1|a|C|3120
9F58|1|a|U|3121
9F58|1|a|A|3122
9F58|1|a|A|3123
9F58|1|a|G|3124

Current chains

Chain a

25S rRNA

Nearby chains

Chain Y

Ubiquitin-60S ribosomal protein L40

Chain i

60S ribosomal protein L9-A

Chain p

60S ribosomal protein L16-A