HL_9F58_070

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

9F58|1|a|A|3243, 9F58|1|a|A|3244, 9F58|1|a|G|3246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F58_070 not in the Motif Atlas

Homologous match to HL_8P9A_180

Geometric discrepancy: 0.08

The information below is about HL_8P9A_180

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31089.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9F58|1|a|C|3240
9F58|1|a|G|3241
9F58|1|a|G|3242
9F58|1|a|A|3243
9F58|1|a|A|3244
9F58|1|a|A|3245
9F58|1|a|G|3246
9F58|1|a|G|3247

Current chains

Chain a

25S rRNA

Nearby chains

Chain d

60S ribosomal protein L3

Chain p

60S ribosomal protein L16-A