HL_9F9S_001

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAUGGUCACG

Length

12 nucleotides

Bulged bases

9F9S|1|CP|U|16, 9F9S|1|CP|G|17, 9F9S|1|CP|G|18, 9F9S|1|CP|U|19, 9F9S|1|CP|C|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_001 not in the Motif Atlas

Homologous match to HL_4JYZ_001

Geometric discrepancy: 0.2985

The information below is about HL_4JYZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.4

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

9F9S|1|CP|C|12
9F9S|1|CP|C|13
9F9S|1|CP|A|14
9F9S|1|CP|A|15
9F9S|1|CP|U|16
9F9S|1|CP|G|17
9F9S|1|CP|G|18
9F9S|1|CP|U|19
9F9S|1|CP|C|20
9F9S|1|CP|A|21
9F9S|1|CP|C|22
9F9S|1|CP|G|23

Current chains

Chain CP

tRNA P-site, stalled

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain LF

60S ribosomal protein L11-A

Chain Lc

60S ribosomal protein L42-A