HL_9F9S_002

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCUICGAAC

Length

9 nucleotides

Bulged bases

9F9S|1|CP|I|34

QA status

Modified nucleotides:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_002 not in the Motif Atlas

Homologous match to HL_9DFC_104

Geometric discrepancy: 0.1118

The information below is about HL_9DFC_104

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

9F9S|1|CP|G|31
9F9S|1|CP|C|32
9F9S|1|CP|U|33
9F9S|1|CP|I|34
9F9S|1|CP|C|35
9F9S|1|CP|G|36
9F9S|1|CP|A|37
9F9S|1|CP|A|38
9F9S|1|CP|C|39

Current chains

Chain CP

tRNA P-site, stalled

Nearby chains

Chain CM

mRNA

Chain S1

Small subunit ribosomal RNA; SSU rRNA

Chain Sq

40S ribosomal protein S16-A