HL_9F9S_004

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGUUGGGAG

Length

10 nucleotides

Bulged bases

9F9S|1|DP|G|18, 9F9S|1|DP|A|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_004 not in the Motif Atlas

Homologous match to HL_7OSM_115

Geometric discrepancy: 0.4574

The information below is about HL_7OSM_115

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_04642.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9F9S|1|DP|C|13
9F9S|1|DP|A|14
9F9S|1|DP|G|15
9F9S|1|DP|U|16
9F9S|1|DP|U|17
9F9S|1|DP|G|18
9F9S|1|DP|G|19
9F9S|1|DP|G|20
9F9S|1|DP|A|21
9F9S|1|DP|G|22

Current chains

Chain DP

tRNA

Nearby chains

Chain M1

Large subunit ribosomal RNA; LSU rRNA

Chain Rp

40S ribosomal protein S15