HL_9F9S_018
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGUAAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 9F9S|1|L1|G|304, 9F9S|1|L1|U|305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F9S_018 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.0751
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9F9S|1|L1|G|303
9F9S|1|L1|G|304
9F9S|1|L1|U|305
9F9S|1|L1|A|306
9F9S|1|L1|A|307
9F9S|1|L1|A|308
9F9S|1|L1|U|309
9F9S|1|L1|U|310
9F9S|1|L1|C|311
9F9S|1|L1|C|312
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain LG
- 60S ribosomal protein L13-A
- Chain LI
- 60S ribosomal protein L15-A
- Chain Lc
- 60S ribosomal protein L42-A
- Chain Li
- 60S ribosomal protein L36-A
- Chain Lq
- 60S ribosomal protein L28
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