HL_9F9S_043

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUUUAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_043 not in the Motif Atlas

Geometric match to HL_4WF9_009

Geometric discrepancy: 0.3698

The information below is about HL_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87381.1

Basepair signature

cWW-F-F

Number of instances in this motif group

3

Unit IDs

9F9S|1|L1|A|1566
9F9S|1|L1|U|1567
9F9S|1|L1|U|1568
9F9S|1|L1|U|1569
9F9S|1|L1|U|1570
9F9S|1|L1|A|1571
9F9S|1|L1|U|1572

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain L2

5.8S ribosomal RNA; 5.8S rRNA

Chain Lt

60S ribosomal protein L25