HL_9F9S_059

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9F9S|1|L1|A|2372, 9F9S|1|L1|A|2373, 9F9S|1|L1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_059 not in the Motif Atlas

Homologous match to HL_8P9A_162

Geometric discrepancy: 0.0598

The information below is about HL_8P9A_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

9F9S|1|L1|G|2369
9F9S|1|L1|G|2370
9F9S|1|L1|G|2371
9F9S|1|L1|A|2372
9F9S|1|L1|A|2373
9F9S|1|L1|C|2374
9F9S|1|L1|G|2375
9F9S|1|L1|G|2376
9F9S|1|L1|G|2377
9F9S|1|L1|C|2378

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain Lm

60S ribosomal protein L32

Chain Lx

60S ribosomal protein L3