HL_9F9S_086
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 9F9S|1|M1|A|40, 9F9S|1|M1|A|43
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F9S_086 not in the Motif Atlas
- Homologous match to HL_8C3A_001
- Geometric discrepancy: 0.0715
- The information below is about HL_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36430.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
9F9S|1|M1|U|38
9F9S|1|M1|A|39
9F9S|1|M1|A|40
9F9S|1|M1|G|41
9F9S|1|M1|C|42
9F9S|1|M1|A|43
9F9S|1|M1|U|44
9F9S|1|M1|A|45
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain MG
- 60S ribosomal protein L13-A
- Chain MI
- 60S ribosomal protein L15-A
- Chain Mc
- 60S ribosomal protein L42-A
- Chain Mq
- 60S ribosomal protein L28
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