HL_9F9S_090

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

9F9S|1|M1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_090 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.0512

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

9F9S|1|M1|U|194
9F9S|1|M1|U|195
9F9S|1|M1|G|196
9F9S|1|M1|G|197
9F9S|1|M1|A|198
9F9S|1|M1|A|199
9F9S|1|M1|C|200
9F9S|1|M1|A|201

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain Mm

60S ribosomal protein L32

Chain Ms

60S ribosomal protein L26-A