HL_9F9S_109

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

9F9S|1|M1|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_109 not in the Motif Atlas

Homologous match to HL_8P9A_136

Geometric discrepancy: 0.3397

The information below is about HL_8P9A_136

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

9F9S|1|M1|C|1076
9F9S|1|M1|U|1077
9F9S|1|M1|U|1078
9F9S|1|M1|A|1079
9F9S|1|M1|A|1080
9F9S|1|M1|U|1081
9F9S|1|M1|U|1082
9F9S|1|M1|G|1083

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain MO

60S ribosomal protein L21-A

Chain Mp

60S ribosomal protein L29

Chain Mz

60S ribosomal protein L5