HL_9F9S_116

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_116 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.0601

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9F9S|1|M1|A|1462
9F9S|1|M1|U|1463
9F9S|1|M1|G|1464
9F9S|1|M1|A|1465
9F9S|1|M1|G|1466
9F9S|1|M1|A|1467
9F9S|1|M1|A|1468
9F9S|1|M1|C|1469
9F9S|1|M1|U|1470

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain MK

60S ribosomal protein L17-A

Chain MM

60S ribosomal protein L19-A

Chain Mn

60S ribosomal protein L31-A