HL_9F9S_122

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

9F9S|1|M1|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_122 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.0892

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9F9S|1|M1|G|1680
9F9S|1|M1|U|1681
9F9S|1|M1|U|1682
9F9S|1|M1|A|1683
9F9S|1|M1|U|1684
9F9S|1|M1|C|1685
9F9S|1|M1|U|1686
9F9S|1|M1|U|1687
9F9S|1|M1|U|1688

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain MM

60S ribosomal protein L19-A

Chain Mv

60S ribosomal protein L22-A