HL_9F9S_135

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9F9S|1|M1|A|2372, 9F9S|1|M1|A|2373, 9F9S|1|M1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_135 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0583

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9F9S|1|M1|G|2369
9F9S|1|M1|G|2370
9F9S|1|M1|G|2371
9F9S|1|M1|A|2372
9F9S|1|M1|A|2373
9F9S|1|M1|C|2374
9F9S|1|M1|G|2375
9F9S|1|M1|G|2376
9F9S|1|M1|G|2377
9F9S|1|M1|C|2378

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain Mm

60S ribosomal protein L32

Chain Mx

60S ribosomal protein L3