Loop HL_9F9S

3D structure

PDB id: 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
Description: Yeast SDD1 Disome with Mbf1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

Loop

Sequence: GUGUAGAAUAAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUAC
Length: 44 nucleotides
Bulged bases: 9F9S|1|M1|U|2453, 9F9S|1|M1|U|2460, 9F9S|1|M1|U|2464, 9F9S|1|M1|A|2468, 9F9S|1|M1|C|2470, 9F9S|1|M1|C|2479, 9F9S|1|M1|A|2480, 9F9S|1|M1|G|2481
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9F9S|1|M1|G|2452
9F9S|1|M1|U|2453
9F9S|1|M1|G|2454
9F9S|1|M1|U|2455
9F9S|1|M1|A|2456
9F9S|1|M1|G|2457
9F9S|1|M1|A|2458
9F9S|1|M1|A|2459
9F9S|1|M1|U|2460
9F9S|1|M1|A|2461
9F9S|1|M1|A|2462
9F9S|1|M1|G|2463
9F9S|1|M1|U|2464
9F9S|1|M1|G|2465
9F9S|1|M1|G|2466
9F9S|1|M1|G|2467
9F9S|1|M1|A|2468
9F9S|1|M1|G|2469
9F9S|1|M1|C|2470
9F9S|1|M1|U|2471
9F9S|1|M1|U|2472
9F9S|1|M1|C|2473
9F9S|1|M1|G|2474
9F9S|1|M1|G|2475
9F9S|1|M1|C|2476
9F9S|1|M1|G|2477
9F9S|1|M1|C|2478
9F9S|1|M1|C|2479
9F9S|1|M1|A|2480
9F9S|1|M1|G|2481
9F9S|1|M1|U|2482
9F9S|1|M1|G|2483
9F9S|1|M1|A|2484
9F9S|1|M1|A|2485
9F9S|1|M1|A|2486
9F9S|1|M1|U|2487
9F9S|1|M1|A|2488
9F9S|1|M1|C|2489
9F9S|1|M1|C|2490
9F9S|1|M1|A|2491
9F9S|1|M1|C|2492
9F9S|1|M1|U|2493
9F9S|1|M1|A|2494
9F9S|1|M1|C|2495

Current chains

Chain M1: Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain DQ: Transfer RNA; tRNA
Chain Rz: 40S ribosomal protein S25-A

HL_9F9S_136