HL_9F9S_139

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9F9S|1|M1|G|2618

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_139 not in the Motif Atlas

Homologous match to HL_8P9A_165

Geometric discrepancy: 0.0812

The information below is about HL_8P9A_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

9F9S|1|M1|C|2616
9F9S|1|M1|U|2617
9F9S|1|M1|G|2618
9F9S|1|M1|OMG|2619
9F9S|1|M1|G|2620
9F9S|1|M1|G|2621
9F9S|1|M1|C|2622
9F9S|1|M1|G|2623
9F9S|1|M1|G|2624

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain ME

60S ribosomal protein L10

Chain Mp

60S ribosomal protein L29