HL_9F9S_141

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

9F9S|1|M1|A|2680

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_141 not in the Motif Atlas

Homologous match to HL_8P9A_167

Geometric discrepancy: 0.299

The information below is about HL_8P9A_167

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9F9S|1|M1|A|2673
9F9S|1|M1|A|2674
9F9S|1|M1|C|2675
9F9S|1|M1|A|2676
9F9S|1|M1|G|2677
9F9S|1|M1|A|2678
9F9S|1|M1|A|2679
9F9S|1|M1|A|2680
9F9S|1|M1|U|2681

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain DP

Transfer RNA; tRNA

Chain MF

60S ribosomal protein L11-A