HL_9F9S_142

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_142 not in the Motif Atlas

Homologous match to HL_8P9A_168

Geometric discrepancy: 0.0715

The information below is about HL_8P9A_168

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

27

Unit IDs

9F9S|1|M1|C|2693
9F9S|1|M1|A|2694
9F9S|1|M1|A|2695
9F9S|1|M1|A|2696
9F9S|1|M1|A|2697
9F9S|1|M1|G|2698
9F9S|1|M1|G|2699
9F9S|1|M1|G|2700

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain ME

60S ribosomal protein L10

Chain MO

60S ribosomal protein L21-A

Chain Mc

60S ribosomal protein L42-A