HL_9F9S_152

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9F9S|1|M1|G|3116, 9F9S|1|M1|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_152 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0547

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9F9S|1|M1|C|3110
9F9S|1|M1|U|3111
9F9S|1|M1|G|3112
9F9S|1|M1|A|3113
9F9S|1|M1|A|3114
9F9S|1|M1|C|3115
9F9S|1|M1|G|3116
9F9S|1|M1|C|3117
9F9S|1|M1|C|3118
9F9S|1|M1|U|3119
9F9S|1|M1|C|3120
9F9S|1|M1|U|3121
9F9S|1|M1|A|3122
9F9S|1|M1|A|3123
9F9S|1|M1|G|3124

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain MD

60S ribosomal protein L9-A

Chain MJ

60S ribosomal protein L16-A

Chain Me

Ubiquitin-60S ribosomal protein L40