HL_9F9S_155

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

9F9S|1|M1|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_155 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0787

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

9F9S|1|M1|G|3303
9F9S|1|M1|U|3304
9F9S|1|M1|A|3305
9F9S|1|M1|U|3306
9F9S|1|M1|A|3307
9F9S|1|M1|C|3308
9F9S|1|M1|G|3309
9F9S|1|M1|A|3310
9F9S|1|M1|C|3311

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain MK

60S ribosomal protein L17-A

Chain Mx

60S ribosomal protein L3