HL_9F9S_159
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CACAUUG
- Length
- 7 nucleotides
- Bulged bases
- 9F9S|1|M2|A|111, 9F9S|1|M2|U|113
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F9S_159 not in the Motif Atlas
- Homologous match to HL_8C3A_076
- Geometric discrepancy: 0.135
- The information below is about HL_8C3A_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22523.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
9F9S|1|M2|C|108
9F9S|1|M2|A|109
9F9S|1|M2|C|110
9F9S|1|M2|A|111
9F9S|1|M2|U|112
9F9S|1|M2|U|113
9F9S|1|M2|G|114
Current chains
- Chain M2
- Saccharomyces cerevisiae S288C 5.8S ribosomal RNA
Nearby chains
- Chain M1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Mf
- 60S ribosomal protein L39
- Chain Mh
- 60S ribosomal protein L37-A
- Chain Mt
- 60S ribosomal protein L25
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