HL_9F9S_160

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_160 not in the Motif Atlas

Homologous match to HL_8P4V_075

Geometric discrepancy: 0.4335

The information below is about HL_8P4V_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

9F9S|1|M2|G|124
9F9S|1|M2|U|125
9F9S|1|M2|A|126
9F9S|1|M2|U|127
9F9S|1|M2|U|128
9F9S|1|M2|C|129

Current chains

Chain M2

Saccharomyces cerevisiae S288C 5.8S ribosomal RNA

Nearby chains

Chain M1

Large subunit ribosomal RNA; LSU rRNA