HL_9F9S_166

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

9F9S|1|R1|U|158, 9F9S|1|R1|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_166 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.2313

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

9F9S|1|R1|G|154
9F9S|1|R1|U|155
9F9S|1|R1|A|156
9F9S|1|R1|A|157
9F9S|1|R1|U|158
9F9S|1|R1|U|159
9F9S|1|R1|C|160

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Rg

40S ribosomal protein S6-A

Chain Ry

40S ribosomal protein S24-A