HL_9F9S_183
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F9S_183 not in the Motif Atlas
- Homologous match to HL_8P9A_209
- Geometric discrepancy: 0.1423
- The information below is about HL_8P9A_209
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9F9S|1|R1|A|900
9F9S|1|R1|G|901
9F9S|1|R1|G|902
9F9S|1|R1|U|903
9F9S|1|R1|G|904
9F9S|1|R1|A|905
9F9S|1|R1|A|906
9F9S|1|R1|A|907
9F9S|1|R1|U|908
9F9S|1|R1|U|909
Current chains
- Chain R1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain CM
- mRNA
- Chain M1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Rf
- 40S ribosomal protein S5
- Chain Ro
- 40S ribosomal protein S14-B
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