HL_9F9S_190

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

9F9S|1|R1|G|1243, 9F9S|1|R1|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_190 not in the Motif Atlas

Homologous match to HL_8P9A_216

Geometric discrepancy: 0.1847

The information below is about HL_8P9A_216

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9F9S|1|R1|A|1238
9F9S|1|R1|U|1239
9F9S|1|R1|U|1240
9F9S|1|R1|G|1241
9F9S|1|R1|A|1242
9F9S|1|R1|G|1243
9F9S|1|R1|A|1244
9F9S|1|R1|G|1245
9F9S|1|R1|C|1246
9F9S|1|R1|U|1247

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain RD

Small ribosomal subunit protein uS14A

Chain RF

Ubiquitin

Chain Rp

40S ribosomal protein S15