HL_9F9S_198

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_198 not in the Motif Atlas

Homologous match to HL_8C3A_227

Geometric discrepancy: 0.1976

The information below is about HL_8C3A_227

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

9F9S|1|R1|G|1778
9F9S|1|R1|U|1779
9F9S|1|R1|G|1780
9F9S|1|R1|A|1781
9F9S|1|R1|A|1782
9F9S|1|R1|C|1783

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain M1

Large subunit ribosomal RNA; LSU rRNA

Chain Md

60S ribosomal protein L41-A