HL_9F9S_199

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUGAUCCUGC

Length

11 nucleotides

Bulged bases

9F9S|1|S1|U|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_199 not in the Motif Atlas

Homologous match to HL_8C3A_192

Geometric discrepancy: 0.0443

The information below is about HL_8C3A_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.3

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9F9S|1|S1|G|7
9F9S|1|S1|U|8
9F9S|1|S1|U|9
9F9S|1|S1|G|10
9F9S|1|S1|A|11
9F9S|1|S1|U|12
9F9S|1|S1|C|13
9F9S|1|S1|C|14
9F9S|1|S1|U|15
9F9S|1|S1|G|16
9F9S|1|S1|C|17

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain CM

mRNA

Chain Sc

40S ribosomal protein S2

Chain Sx

40S ribosomal protein S23-A