HL_9F9S_221

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_221 not in the Motif Atlas

Homologous match to HL_8P9A_213

Geometric discrepancy: 0.0439

The information below is about HL_8P9A_213

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9F9S|1|S1|A|1084
9F9S|1|S1|G|1085
9F9S|1|S1|A|1086
9F9S|1|S1|A|1087
9F9S|1|S1|A|1088
9F9S|1|S1|U|1089

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain SA

Small ribosomal subunit protein eS26A

Chain Sc

40S ribosomal protein S2

Chain Sw

40S ribosomal protein S22-A