HL_9F9S_234
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACUGAA(YYG)AU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: YYG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F9S_234 not in the Motif Atlas
- Homologous match to HL_6GSK_203
- Geometric discrepancy: 0.1396
- The information below is about HL_6GSK_203
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
9F9S|1|DP|A|31
9F9S|1|DP|C|32
9F9S|1|DP|U|33
9F9S|1|DP|G|34
9F9S|1|DP|A|35
9F9S|1|DP|A|36
9F9S|1|DP|YYG|37
9F9S|1|DP|A|38
9F9S|1|DP|U|39
Current chains
- Chain DP
- tRNA
Nearby chains
- Chain CM
- mRNA
- Chain M1
- Large subunit ribosomal RNA; LSU rRNA
- Chain R1
- Small subunit ribosomal RNA; SSU rRNA
- Chain RE
- 40S ribosomal protein S30-A
- Chain Rx
- 40S ribosomal protein S23-A
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