HL_9F9S_236

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

9F9S|1|S1|U|833

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_236 not in the Motif Atlas

Homologous match to HL_8P9A_236

Geometric discrepancy: 0.2981

The information below is about HL_8P9A_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88364.4

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9F9S|1|S1|A|829
9F9S|1|S1|U|830
9F9S|1|S1|U|831
9F9S|1|S1|U|832
9F9S|1|S1|U|833
9F9S|1|S1|G|834
9F9S|1|S1|U|835
9F9S|1|S1|U|836
9F9S|1|S1|G|837
9F9S|1|S1|G|838
9F9S|1|S1|U|839
9F9S|1|S1|U|840
9F9S|1|S1|U|841
9F9S|1|S1|C|842
9F9S|1|S1|U|843

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Sg

40S ribosomal protein S6-A

Chain Sl

40S ribosomal protein S11-A