HL_9FBV_006

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9FBV|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FBV_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.067

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9FBV|1|A|G|259
9FBV|1|A|G|260
9FBV|1|A|U|261
9FBV|1|A|A|262
9FBV|1|A|A|263
9FBV|1|A|C|264
9FBV|1|A|G|265
9FBV|1|A|G|266
9FBV|1|A|C|267

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS17

Chain T

30S ribosomal protein S20