HL_9FBV_008

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FBV_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0674

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9FBV|1|A|A|320
9FBV|1|A|A|321
9FBV|1|A|C|322
9FBV|1|A|U|323
9FBV|1|A|G|324
9FBV|1|A|A|325
9FBV|1|A|G|326
9FBV|1|A|A|327
9FBV|1|A|C|328
9FBV|1|A|A|329
9FBV|1|A|C|330
9FBV|1|A|G|331
9FBV|1|A|G|332
9FBV|1|A|U|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20