HL_9FBV_019

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FBV_019 not in the Motif Atlas

Homologous match to HL_5J7L_020

Geometric discrepancy: 0.0739

The information below is about HL_5J7L_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9FBV|1|A|C|897
9FBV|1|A|G|898
9FBV|1|A|C|899
9FBV|1|A|A|900
9FBV|1|A|A|901
9FBV|1|A|G|902

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA