3D structure

PDB id
9FBV (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with P-site initiatior tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GAU(2MG)(5MC)AACGC
Length
10 nucleotides
Bulged bases
9FBV|1|A|A|968, 9FBV|1|A|G|971
QA status
Modified nucleotides: 2MG, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9FBV_020 not in the Motif Atlas
Homologous match to HL_5J7L_021
Geometric discrepancy: 0.2305
The information below is about HL_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50779.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

9FBV|1|A|G|963
9FBV|1|A|A|964
9FBV|1|A|U|965
9FBV|1|A|2MG|966
9FBV|1|A|5MC|967
9FBV|1|A|A|968
9FBV|1|A|A|969
9FBV|1|A|C|970
9FBV|1|A|G|971
9FBV|1|A|C|972

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain I
Small ribosomal subunit protein uS9
Chain J
Small ribosomal subunit protein uS10
Chain M
Small ribosomal subunit protein uS13
Chain Z
Transfer RNA; tRNA

Coloring options:


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