3D structure

PDB id
9FBV (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with P-site initiatior tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GCUCAUAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9FBV_033 not in the Motif Atlas
Homologous match to HL_6CFJ_107
Geometric discrepancy: 0.092
The information below is about HL_6CFJ_107
Detailed Annotation
tRNA anticodon loop
Broad Annotation
Anticodon loop
Motif group
HL_81376.2
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
42

Unit IDs

9FBV|1|Z|G|31
9FBV|1|Z|C|32
9FBV|1|Z|U|33
9FBV|1|Z|C|34
9FBV|1|Z|A|35
9FBV|1|Z|U|36
9FBV|1|Z|A|37
9FBV|1|Z|A|38
9FBV|1|Z|C|39

Current chains

Chain Z
fMet-tRNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain I
Small ribosomal subunit protein uS9
Chain X
messenger RNA

Coloring options:


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