HL_9FBV_050

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

9FBV|1|a|U|545, 9FBV|1|a|U|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FBV_050 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.2728

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

9FBV|1|a|C|544
9FBV|1|a|U|545
9FBV|1|a|U|546
9FBV|1|a|A|547
9FBV|1|a|G|548
9FBV|1|a|G|549

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain q

Large ribosomal subunit protein bL21