3D structure

PDB id
9FBV (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with P-site initiatior tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CGCAAG
Length
6 nucleotides
Bulged bases
9FBV|1|a|C|1870
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9FBV_078 not in the Motif Atlas
Homologous match to HL_5J7L_180
Geometric discrepancy: 0.4652
The information below is about HL_5J7L_180
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

9FBV|1|a|C|1868
9FBV|1|a|G|1869
9FBV|1|a|C|1870
9FBV|1|a|A|1871
9FBV|1|a|A|1872
9FBV|1|a|G|1873

Current chains

Chain a
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1144 s