HL_9FBV_079

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

9FBV|1|a|A|1913, 9FBV|1|a|C|1914, 9FBV|1|a|A|1916

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FBV_079 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.0528

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

9FBV|1|a|G|1910
9FBV|1|a|PSU|1911
9FBV|1|a|A|1912
9FBV|1|a|A|1913
9FBV|1|a|C|1914
9FBV|1|a|3TD|1915
9FBV|1|a|A|1916
9FBV|1|a|PSU|1917
9FBV|1|a|A|1918
9FBV|1|a|A|1919
9FBV|1|a|C|1920

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Z

Transfer RNA; tRNA