HL_9FBV_084

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

9FBV|1|a|A|2268, 9FBV|1|a|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FBV_084 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0526

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

9FBV|1|a|C|2264
9FBV|1|a|U|2265
9FBV|1|a|A|2266
9FBV|1|a|A|2267
9FBV|1|a|A|2268
9FBV|1|a|G|2269
9FBV|1|a|A|2270
9FBV|1|a|G|2271
9FBV|1|a|U|2272
9FBV|1|a|A|2273
9FBV|1|a|A|2274
9FBV|1|a|C|2275
9FBV|1|a|G|2276

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain l

Large ribosomal subunit protein uL16

Chain v

Large ribosomal subunit protein bL27