HL_9FBV_089

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

9FBV|1|a|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FBV_089 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0596

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9FBV|1|a|U|2404
9FBV|1|a|G|2405
9FBV|1|a|A|2406
9FBV|1|a|A|2407
9FBV|1|a|U|2408
9FBV|1|a|G|2409
9FBV|1|a|G|2410
9FBV|1|a|A|2411
9FBV|1|a|A|2412
9FBV|1|a|G|2413

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L15